So I found some mud last night, couldn't resist so I went through. Got back on the road and everything was fine. About a mile, mile and half down the road, it didn't want to shift into third. I had to get up anywhere from 4.5 - 5k and let off before it would shift. So I limped it back home and hoped it was just a wet sensor or something.
So I get in this morning and and now it's idling at about 1.7k. I assume the other problem is still there, just haven't driven it to see.